1C2W - early cryo-EM reconstruction. alignment failed
2FTC - early model of a mitoribosome LSU. alignment failed
2RDO - early cryo-EM model of an LSU. alignment failed
3J2C - assembly intermediate. alignment failed
6HIV - Trypanosoma bruci. alignment failed 
6HIW - Trypanosoma bruci. alignment failed
6HIX - Trypanosoma bruci. alignment failed
6HIY - Trypanosoma bruci. alignment failed
6HIZ - Trypanosoma bruci. alignment failed
6SGB - Trypanosoma bruci. alignment failed
7AFL - only contains an SSU body
7AFO - only contains an SSU body
7AOR - Trypanosoma cruzi. alignment failed.
7ASA - only contains a few residues from the LSU
7BGD - only contains an SSU body
7BOD - only contains an SSU body
7BOF - only contains an SSU body
7BOG - only contains an SSU body
7BOI - only contains an SSU body
7O5H - only contains an SSU body
7OI0 - only contains an SSU body
7PUA - Trypanosoma bruci. contact-based identification of head failed 
7PUB - Trypanosoma bruci. contact-based identification of head failed 
7QIX - only contains an SSU body
7QIY - only contains an SSU head
7WTL - human ribosome, pre-40S assembly intermediate. alignment failed
7WTM - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTN - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTO - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTP - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTQ - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTR - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTS - human ribosome, pre-40S assembly intermediate. alignment failed 
7WTW - human ribosome, pre-40S assembly intermediate. alignment failed 
8C00 - Saccharomyces cerevisiae, SSU assembly intermediate. alignment failed 
8C83 - Saccharomyces cerevisiae, in vitro reconstituted Otu2-bound Ub-40S comple. alignment failed
8CAI - E. coli. only contains an SSU body
8CAZ - E. coli. only contains an SSU head
8CEP - only contains an SSU body
8CF1 - E. coli. only contains an SSU head
8CGI - E. coli. only contains an SSU head
8CGJ - E.coli. contains the SSU body and only some of head
8CGR - E.coli. only contains an SSU head
8CGU - E.coli. only contains an SSU head
8CSP - human mitoribosome, SSU assembly intermediate. alignment failed
8CSP - human mitoribosome, SSU assembly intermediate. alignment failed
8CSQ - human mitoribosome, SSU assembly intermediate. alignment failed
8CSR - human mitoribosome, SSU assembly intermediate. alignment failed
8CSS - human mitoribosome, SSU assembly intermediate. alignment failed
8CSU - human mitoribosome, SSU assembly intermediate. alignment failed
8E5T - Saccharomyces cerevisiae, LSU assembly intermediate. alignment failed
8FKR - human ribosome, pre-60S assembly intermediate. alignment failed
8FL0 - human ribosome, pre-60S assembly intermediate. alignment failed
8JSH - E. coli. only contains SSU body
8KIE - Escherichia coli, only contains part of a ribosome based on a partial EM map. Accordingly, RAD protocols can not be applied.
8ONY - Thermochaetoides thermophila DSM 1495, does not contain complete rRNA
8ONZ - Thermochaetoides thermophila DSM 1495, does not contain complete rRNA
8R57 - Triticum aestivum, only contains SSU head
8R6F - Triticum aestivum, only contains SSU body
8RG0 - Human initiation complex. This entry only contains the core of the complex.  Since it does not have a complete/near-complete SSU, it could not be analyzed with RADtool.
9F1C - Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E. Alignment of the SSU failed. We anticipate improvement to the RAD algorithms will allow this structure to be analyzed. However, it is currently not included in the RAD database.
9FCO - only contains an SSU body and a few head residues
9FDA - only contains an SSU body and a few head residues
9FIB - only contains an SSU body
9FPZ - Homo sapien structure that doesn't contain complete models of the rRNA.  
9FQ0 - Human NatA-NAC-MAP1 80S ribosome complex. The structure is incomplete and can not be analyzed with RADtool.
9HNY - Trypanosoma bruci. alignment failed